Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs78484963 chr17:1410697 T/C 0.000277 173 25.53 23.08 14.43 KM Plot
PCPG rs78495928 chr12:56635080 G/C 1.1E-7 177 25.08 29.13 0.8 KM Plot
PCPG rs78530336 chr16:89899055 T/C 0.000176 174 25.87 22.63 36.37 KM Plot
PCPG rs78606324 chr2:228479109 CA/C 5.29E-11 176 24.7 36.7 10.3 KM Plot
PCPG rs78645162 chr7:36172761 G/A 0.000411 178 25.67 24.6 14.37 KM Plot
PCPG rs78749928 chr18:51842886 A/C 4.78E-11 176 24.93 34.73 10.3 KM Plot
PCPG rs78772509 chr22:21283601 T/C 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs78789990 chr11:68138001 G/A 0.000275 170 25 26.85 19.87 KM Plot
PCPG rs78807390 chr2:241525314 C/A 7.15E-12 178 25.77 24.62 6.73 KM Plot
PCPG rs78810275 chr2:176181090 C/T 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs78818156 chr10:50516965 A/G 3.98E-6 177 24.5 34.47 25.17 KM Plot
PCPG rs78850050 chr16:89823009 CAAAG/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs78907385 chr7:158674600 T/C 0 177 25.53 20.37 3.17 KM Plot
PCPG rs78923197 chr3:39772634 C/G 9.42E-8 175 25.77 19.88 19.87 KM Plot
PCPG rs79006456 chr16:71638639 T/G 1.04E-5 175 23.43 30.93 14.5 KM Plot